Publications in 2012:
1. Wang, B., Zhang, S.G., Wang, X.F., Tan, M., Xi, Y*. (2012) Testing for differentially-expressed microRNAs with errors-in-variables nonparametric regression. PLoS ONE. Accepted.
2. Whitt, J.D., Li, N., Tinsley, H.N., Chen, X., Zhang, W., Li, Y., Gary, B.D., Keeton, A.B., Xi, Y., Abadi, A.H., Grizzle, W.E., Piazza, G.A. (2012) A novel sulindac derivative that potently suppresses colon tumor cell growth by inhibiting cGMP phosphodiesterase and beta-catenin transcriptional activity. Cancer Prev Res. In press.
3. Li, X., Gao, L., Cui, Q., Gary, B., Dyness, D.L., Taylor, W., Shevde-Samant, L.R., Samant, R.S., Dean-Colomb, W., Piazza, G.A., Xi, Y*. (2012) Sulindac inhibits tumor cell invasion by suppressing NF-kappaB mediated transcription of microRNAs. Oncogene. In press. doi: 10.1038/onc.2011.655.
4. Gao, L., Gao, Y., Li, X., Howell, P., Kumar, R., Su, X., Vlassov, A.V., Piazza, GA., Riker, A.I., Sun, D., Xi, Y*. (2012) Aquaporins mediate the chemoresistance of human melanoma cells to arsenite. Mol Oncol. 6(1):81-87
5. Li, X., Zhang, J., Gao, L., McClellan, S., Finan, M., Butler, T.W., Owen, L.B., Piazza, G.A., Xi, Y*. (2012) MiR-181 mediates cell differentiation by interrupting the Lin28 and let-7 feedback circuit. Cell Death Differ. 19(3):378-386
Publications in 2011:
1. Li, X., Wainscott, C., Xi, Y*. (2011) MicroRNA provides insight for understanding esophageal cancer. Thoracic Cancer. 2(4): 134-142.
2. Wang, B., Wang, XF., Xi, Y. (2011) Normalizing bead-based microRNA expression data: a measurement error model-based approach. Bioinformatics. 27(11):1506-1512
3. Risberg, K., Guldvik, IJ., Palchaudhuri, R., Xi, Y., Ju, J., Fodstad, O., Hergenrother, PJ., Andersson, Y. (2011) Triphenylmethyl derivatives enhances the anticancer effect of immunotoxins. J Immunother. 34(5):438-447.
4. Kumar, R., Xi, Y*. (2011) MicroRNAs, epigenetic machinery, and lung cancer. Thoracic Cancer. 2(2): 35-44
5. Wang, B., Howell, P., Bruheim, S., Ju, J., Owen, L., Fodstad,O., Xi, Y*. (2011) Systematic evaluation of three microRNA profiling platforms: microarray, beads array, and quantitative real-time PCR array. PLoS ONE. 6(2):e17167.
Other Selected Publications:
1. Howell, P., Li, X., Riker, AI., Xi, Y*. (2010) MicroRNA in Melanoma. Ochsner J. 10(2):83-92.
2. Wang, B., Wang, XF., Howell, P., Qian, X., Huang, K., Riker, A.l., Ju, J., Xi, Y*. (2010) A personalized microRNA microarray normalization method using a logistic regression model. Bioinformatics 26(2): 228-234.
3. Xi, Y., Nakajima, G., Gavin, E., Morris, C., Kudo, K., Hayashi, K., Ju, J. (2007) Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples. RNA 13(10): 1668-1674. (Cited more than 180 times)
4. Xi, Y., Edwards, J.R., Ju, J. (2007) Investigation of miRNA Biology by Bioinformatic Tools and Impact of miRNAs in Colorectal Cancer - Regulatory relationship of c-Myc and p53 with miRNAs. Cancer Informatics. 3: 245–253.
5. Xi, Y., Nakajima, G., Hamil, T., Fodstad, O., Riker, A., Ju, J. (2006) IGFBP-3 expression is associated with tumor progression in melanoma. Mol Cancer Ther. 5(12): 1-7.
6. Xi, Y., Formentini, A., Chien, M., Weir, D.B., Russo, J.J., Ju, J., Kornmann M., Ju, J. (2006) Prognostic Values of microRNAs in Colorectal Cancer. Biomarker Insights. 2:113-121 (Cited more than 100 times)
7. Xi, Y., Nakajima, G., Schmitz, J.C., Chu, E., Ju, J. (2006) Multi-level gene expression profiles affected by thymidylate synthase and 5-fluorouracil in colon cancer. BMC Genomics 7(1): 68.
8. Xi, Y., Shalgi, R., Fodstad, O., Pilpel, Y., Ju, J. (2006) Differentially Regulated miRNAs and actively translated mRNA transcripts by tumor suppressor p53 in colon cancer. Clin Cancer Res. 12 (7): 2014-2024. (Cited more than 90 times)
9. Xi, Y., Ding,K., Su,X., Chen,D., You,W., Shen, Y., Ke,Y. (2004) p53 polymorphism and p21WAF1/CIP1 haplotype in the intestinal gastric cancer and the precancerous lesions. Carcinogenesis 25(11): 2201-2206 (Cited more than 30 times)
10. Xi, Y., Ding, K., Ren, Y., Shen, Y., Ke, Y. (2002) Esophageal cancer in Chinese population: no polymorphism in codon 149 of P21Waf1/Cip1 cyclin dependent kinase gene. Oncogene 21 (50): 7745-7748.
Book Chapter:
Li, X. and Xi, Y*. (2011). Predictive Capacity and Functional Significance of MicroRNA in Human Melanoma, Research on Melanoma - A Glimpse into Current Directions and Future Trends, Mandi Murph (Ed.), ISBN: 978-953-307-293-7, InTech.
Book:
Skin Cancer Overview, Yaguang Xi (Ed.), 2011, ISBN: 978-953-307-746-8, InTech.
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